Package: fbi 0.11.41.9000

William K. Morris

fbi: Finnish Biodiversity Indicators

Finnish biodiversity indicators is a service providing time series of abundance indices and related metrics for Finland. The input data for the indices are provided by the Finnish Biodiversity Information Facility.

Authors:Finnish Museum of Natural History - Luomus [cph], William K. Morris [aut, cre]

fbi_0.11.41.9000.tar.gz
fbi_0.11.41.9000.zip(r-4.7)fbi_0.11.41.9000.zip(r-4.6)fbi_0.11.41.9000.zip(r-4.5)
fbi_0.11.41.9000.tgz(r-4.6-any)fbi_0.11.41.9000.tgz(r-4.5-any)
fbi_0.11.41.9000.tar.gz(r-4.7-any)fbi_0.11.41.9000.tar.gz(r-4.6-any)
fbi_0.11.41.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
fbi/json (API)

# Install 'fbi' in R:

install.packages('fbi', repos = c('https://luomus.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/luomus/fin-biodiv-indicators/issues

Pkgdown/docs site:https://indicators-dev.laji.fi

On CRAN:

5.73 score 97 scripts 22 exports 70 dependencies

Last updated from:fe30dfa9a7 (on dev). Checks:9 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
linux-devel-x86_64	OK	247
source / vignettes	OK	258
linux-release-x86_64	OK	194
macos-release-arm64	OK	127
macos-oldrel-arm64	OK	162
windows-devel	OK	162
windows-release	OK	158
windows-oldrel	OK	146
wasm-release	OK	167

Exports:check_input clean_cache combine_with_surveys format_date get_indices get_output pick_first_survey_in_fortnight pick_first_survey_in_winter pick_first_survey_in_year process_funs remove_all_zero_locations require_minimum_gaps require_minimum_weeks require_seven_fortnights require_two_years set_start_year sum_by_event sum_over_sections update_data update_index update_taxon_index zero_fill

Dependencies:abind arm askpass base64enc blob boot cli coda config cpp11 curl DBI dbplyr dplyr farver finbif generics ggplot2 glue gtable httr2 isoband jsonlite labeling later lattice lifecycle lme4 lubridate lutz magrittr MASS Matrix minqa nlme nloptr openssl pillar pkgconfig pool purrr R6 rappdirs rbibutils rbms RColorBrewer Rcpp RcppEigen Rdpack reformulas rlang rtrim S7 scales secretbase stringi stringr svglite sys systemfonts textshaping tibble tidyr tidyselect timechange utf8 vctrs viridisLite withr yaml

API | Updates | Indicator types | Single-taxon indicators | Multi-taxon indicators

Rendered fromoverview.Rmdusingknitr::rmarkdown

Last update: 2025-03-04
Started: 2024-01-02

Alpine Bird Indicator

Northern Finland

Rendered fromalpine-birds.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Butterfly Abundance Indicator

Finland | Southern Finland

Rendered frombutterfly-abundance.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Community temperature index

Load packages | Survey data | Count data | Create Index

Rendered fromcommunity-temperature-index.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Community Temperature Indices

Winter Birds | Summer Birds | Farmland Butterflies

Rendered fromcommunity-temperature-indices.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Defaults | Sections | Name | Taxa | Extra taxa | From | Filters | Surveys | Counts | Combine | Use data after | Model

Rendered fromconfiguration.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Farmland Bird Indicator

Finland | Northern Finland | Southern Finland

Rendered fromfarmland-birds.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Farmland Butterfly Indicator

Rendered fromfarmland-butterflies.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Forest Bird Indicator

Finland | Northern Finland | Southern Finland

Rendered fromforest-birds.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Mire Bird Indicator

Finland | Northern Finland | Southern Finland

Rendered frommire-birds.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Finland | Northern Finland | Southern Finland

Rendered frommoths.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Multi-taxon indicator (trim)

Load packages | Survey data | Count data | Fit TRIM Models | Create Index

Rendered frommulti-taxon-indicator-trim.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Overall abundance

Load packages | Survey data | Count data | Create Index

Rendered fromoverall-abundance.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Single-taxon indicator (rbms)

Load packages | Survey data | Count data | Fit RBMS Model | Create Index

Rendered fromsingle-taxon-indicator-rbms.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Single-taxon indicator (trim)

Load packages | Survey data | Count data | Fit TRIM Model | Create Index

Rendered fromsingle-taxon-indicator-trim.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Winter Bird Indicator

Finland | Northern Finland | Southern Finland

Rendered fromwinter-birds.Rmdusingknitr::rmarkdown

Last update: 2024-01-02
Started: 2024-01-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check input	check_input
Clean cache	clean_cache
Combine with surveys	combine_with_surveys
Format date	format_date
Get indices	get_indices
Get output	get_output
Pick first survey in fortnight	pick_first_survey_in_fortnight
Pick first survey in winter	pick_first_survey_in_winter
Pick first survey in year	pick_first_survey_in_year
Process functions	process_funs
Remove all-zero locations	remove_all_zero_locations
Require minimum gaps	require_minimum_gaps
Require minimum weeks	require_minimum_weeks
Require seven fortnights	require_seven_fortnights
Require at least two years	require_two_years
Set start year	set_start_year
Sum by event	sum_by_event
Sum over sections	sum_over_sections
Update data	update_data
Update index	update_index
Update taxon index	update_taxon_index
Zero fill	zero_fill

Usage by other packages (reverse dependencies)