{ "_id": "6a4793679c870a7243dbd1c3", "Package": "fbi", "Title": "Finnish Biodiversity Indicators", "Version": "0.11.41.9000", "Authors@R": "c(\nperson(given = \"Finnish Museum of Natural History - Luomus\",\nrole = \"cph\"),\nperson(given = \"William K.\",\nfamily = \"Morris\",\nrole = c(\"aut\", \"cre\"),\nemail = \"willi@mmorris.email\",\ncomment = c(ORCID = \"0000-0002-8686-4154\"))\n)", "Description": "Finnish biodiversity indicators is a service providing\ntime series of abundance indices and related metrics for\nFinland. The input data for the indices are provided by the\nFinnish Biodiversity Information Facility.", "Remotes": [ "RetoSchmucki/rbms" ], "License": "MIT + file LICENSE", "URL": "https://github.com/luomus/fin-biodiv-indicators,\nhttps://indicators-dev.laji.fi/docs/dev/", "VignetteBuilder": "knitr", "BugReports": "https://github.com/luomus/fin-biodiv-indicators/issues", "Encoding": "UTF-8", "Config/roxygen2/version": "8.0.0", "Config/roxygen2/markdown": "TRUE", "Repository": "https://luomus.r-universe.dev", "Date/Publication": "2026-05-20 07:53:20 UTC", "RemoteUrl": "https://github.com/luomus/fin-biodiv-indicators", "RemoteRef": "dev", "RemoteSha": "fe30dfa9a76501579bec70fd6921c54776092e85", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-02 15:24:51 UTC", "User": "root" }, "Author": "Finnish Museum of Natural History - Luomus [cph],\nWilliam K. Morris [aut, cre] (ORCID:\n)", "Maintainer": "William K. Morris ", "_user": "luomus", "_type": "src", "_file": "fbi_0.11.41.9000.tar.gz", "_fileid": "https://r2.ropensci.org/aa1af7a5801eb68aecf2357a22b76be0afcb14a49205ed90081b8168bc74ab42", "_filesize": 4588530, "_sha256": "aa1af7a5801eb68aecf2357a22b76be0afcb14a49205ed90081b8168bc74ab42", "_expires": "2026-10-11T10:48:06.000Z", "_created": "2026-07-02T15:24:51.000Z", "_published": "2026-07-03T10:48:07.205Z", "_jobs": [ { "job": 84983845331, "time": 247, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8043638789" }, { "job": 84983845279, "time": 194, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8043615783" }, { "job": 84983845362, "time": 162, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8043765572" }, { "job": 84983845352, "time": 127, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8043751901" }, { "job": 84983845129, "time": 258, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8043525632" }, { "job": 84983845485, "time": 167, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8043603930" }, { "job": 84983845290, "time": 162, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8043601338" }, { "job": 84983845342, "time": 146, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8043594560" }, { "job": 84983845402, "time": 158, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8043599751" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264", "_status": "success", "_upstream": "https://github.com/luomus/fin-biodiv-indicators", "_commit": { "id": "fe30dfa9a76501579bec70fd6921c54776092e85", "author": "wkmor1 ", "committer": "wkmor1 ", "message": "Increment version\n", "time": 1779263600 }, "_maintainer": { "name": "William K. Morris", "email": "willi@mmorris.email", "login": "wkmor1", "description": "", "uuid": 1680870, "orcid": "0000-0002-8686-4154" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "arm", "role": "Imports" }, { "package": "blob", "role": "Imports" }, { "package": "config", "role": "Imports" }, { "package": "dbplyr", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "finbif", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "lme4", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "pool", "role": "Imports" }, { "package": "rbms", "role": "Imports" }, { "package": "rtrim", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "svglite", "role": "Imports" }, { "package": "yaml", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" }, { "package": "DBI", "role": "Suggests" }, { "package": "RPostgres", "role": "Suggests" } ], "_owner": "luomus", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-31", "n": 4 }, { "week": "2026-05", "n": 4 }, { "week": "2026-07", "n": 5 }, { "week": "2026-09", "n": 6 }, { "week": "2026-10", "n": 5 }, { "week": "2026-20", "n": 4 }, { "week": "2026-21", "n": 11 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "wkmor1", "count": 891, "uuid": 1680870 } ], "_userbio": { "uuid": 15819495, "type": "organization", "name": "Luomus", "followers": 9, "description": "Finnish Museum of Natural History Luomus & Finnish Biodiversity Information Facility" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fbi" }, "_devurl": "https://github.com/luomus/fin-biodiv-indicators", "_pkgdown": "https://indicators-dev.laji.fi/docs/dev/", "_searchresults": 97, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/fbi.html", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_cranurl": false, "_exports": [ "check_input", "clean_cache", "combine_with_surveys", "format_date", "get_indices", "get_output", "pick_first_survey_in_fortnight", "pick_first_survey_in_winter", "pick_first_survey_in_year", "process_funs", "remove_all_zero_locations", "require_minimum_gaps", "require_minimum_weeks", "require_seven_fortnights", "require_two_years", "set_start_year", "sum_by_event", "sum_over_sections", "update_data", "update_index", "update_taxon_index", "zero_fill" ], "_help": [ { "page": "check_input", "title": "Check input", "topics": [ "check_input" ] }, { "page": "clean_cache", "title": "Clean cache", "topics": [ "clean_cache" ] }, { "page": "combine_with_surveys", "title": "Combine with surveys", "topics": [ "combine_with_surveys" ] }, { "page": "format_date", "title": "Format date", "topics": [ "format_date" ] }, { "page": "get_indices", "title": "Get indices", "topics": [ "get_indices" ] }, { "page": "get_output", "title": "Get output", "topics": [ "get_output" ] }, { "page": "pick_first_survey_in_fortnight", "title": "Pick first survey in fortnight", "topics": [ "pick_first_survey_in_fortnight" ] }, { "page": "pick_first_survey_in_winter", "title": "Pick first survey in winter", "topics": [ "pick_first_survey_in_winter" ] }, { "page": "pick_first_survey_in_year", "title": "Pick first survey in year", "topics": [ "pick_first_survey_in_year" ] }, { "page": "process_funs", "title": "Process functions", "topics": [ "process_funs" ] }, { "page": "remove_all_zero_locations", "title": "Remove all-zero locations", "topics": [ "remove_all_zero_locations" ] }, { "page": "require_minimum_gaps", "title": "Require minimum gaps", "topics": [ "require_minimum_gaps" ] }, { "page": "require_minimum_weeks", "title": "Require minimum weeks", "topics": [ "require_minimum_weeks" ] }, { "page": "require_seven_fortnights", "title": "Require seven fortnights", "topics": [ "require_seven_fortnights" ] }, { "page": "require_two_years", "title": "Require at least two years", "topics": [ "require_two_years" ] }, { "page": "set_start_year", "title": "Set start year", "topics": [ "set_start_year" ] }, { "page": "sum_by_event", "title": "Sum by event", "topics": [ "sum_by_event" ] }, { "page": "sum_over_sections", "title": "Sum over sections", "topics": [ "sum_over_sections" ] }, { "page": "update_data", "title": "Update data", "topics": [ "update_data" ] }, { "page": "update_index", "title": "Update index", "topics": [ "update_index" ] }, { "page": "update_taxon_index", "title": "Update taxon index", "topics": [ "update_taxon_index" ] }, { "page": "zero_fill", "title": "Zero fill", "topics": [ "zero_fill" ] } ], "_readme": "https://github.com/luomus/fin-biodiv-indicators/raw/dev/README.md", "_rundeps": [ "abind", "arm", "askpass", "base64enc", "blob", "boot", "cli", "coda", "config", "cpp11", "curl", "DBI", "dbplyr", "dplyr", "farver", "finbif", "generics", "ggplot2", "glue", "gtable", "httr2", "isoband", "jsonlite", "labeling", "later", "lattice", "lifecycle", "lme4", "lubridate", "lutz", "magrittr", "MASS", "Matrix", "minqa", "nlme", "nloptr", "openssl", "pillar", "pkgconfig", "pool", "purrr", "R6", "rappdirs", "rbibutils", "rbms", "RColorBrewer", "Rcpp", "RcppEigen", "Rdpack", "reformulas", "rlang", "rtrim", "S7", "scales", "secretbase", "stringi", "stringr", "svglite", "sys", "systemfonts", "textshaping", "tibble", "tidyr", "tidyselect", "timechange", "utf8", "vctrs", "viridisLite", "withr", "yaml" ], "_vignettes": [ { "source": "alpine-birds.Rmd", "filename": "alpine-birds.html", "title": "Alpine Bird Indicator", "engine": "knitr::rmarkdown", "headings": [ "", "Northern Finland" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "butterfly-abundance.Rmd", "filename": "butterfly-abundance.html", "title": "Butterfly Abundance Indicator", "engine": "knitr::rmarkdown", "headings": [ "", "Finland", "Southern Finland" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "community-temperature-index.Rmd", "filename": "community-temperature-index.html", "title": "Community temperature index", "engine": "knitr::rmarkdown", "headings": [ "Load packages", "Survey data", "Count data", "Create Index" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "community-temperature-indices.Rmd", "filename": "community-temperature-indices.html", "title": "Community Temperature Indices", "engine": "knitr::rmarkdown", "headings": [ "", "Winter Birds", "Summer Birds", "Farmland Butterflies" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "configuration.Rmd", "filename": "configuration.html", "title": "Configuration", "engine": "knitr::rmarkdown", "headings": [ "Defaults", "Sections", "Name", "Taxa", "Extra taxa", "From", "Filters", "Surveys", "Counts", "Combine", "Use data after", "Model" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "farmland-birds.Rmd", "filename": "farmland-birds.html", "title": "Farmland Bird Indicator", "engine": "knitr::rmarkdown", "headings": [ "", "Finland", "Northern Finland", "Southern Finland" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "farmland-butterflies.Rmd", "filename": "farmland-butterflies.html", "title": "Farmland Butterfly Indicator", "engine": "knitr::rmarkdown", "headings": [ "", "RBMS", "TRIM" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "forest-birds.Rmd", "filename": "forest-birds.html", "title": "Forest Bird Indicator", "engine": "knitr::rmarkdown", "headings": [ "", "Finland", "Northern Finland", "Southern Finland" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "mire-birds.Rmd", "filename": "mire-birds.html", "title": "Mire Bird Indicator", "author": "William K. Morris", "engine": "knitr::rmarkdown", "headings": [ "", "Finland", "Northern Finland", "Southern Finland" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "moths.Rmd", "filename": "moths.html", "title": "Moth Indicator", "engine": "knitr::rmarkdown", "headings": [ "", "Finland", "Northern Finland", "Southern Finland" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "multi-taxon-indicator-trim.Rmd", "filename": "multi-taxon-indicator-trim.html", "title": "Multi-taxon indicator (trim)", "engine": "knitr::rmarkdown", "headings": [ "Load packages", "Survey data", "Count data", "Fit TRIM Models", "Create Index" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "overall-abundance.Rmd", "filename": "overall-abundance.html", "title": "Overall abundance", "engine": "knitr::rmarkdown", "headings": [ "Load packages", "Survey data", "Count data", "Create Index" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "overview.Rmd", "filename": "overview.html", "title": "Overview", "engine": "knitr::rmarkdown", "headings": [ "API", "Updates", "Indicator types", "Single-taxon indicators", "Multi-taxon indicators" ], "created": "2024-01-02 12:37:54", "modified": "2025-03-04 09:18:42", "commits": 2 }, { "source": "single-taxon-indicator-rbms.Rmd", "filename": "single-taxon-indicator-rbms.html", "title": "Single-taxon indicator (rbms)", "engine": "knitr::rmarkdown", "headings": [ "Load packages", "Survey data", "Count data", "Fit RBMS Model", "Create Index" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "single-taxon-indicator-trim.Rmd", "filename": "single-taxon-indicator-trim.html", "title": "Single-taxon indicator (trim)", "engine": "knitr::rmarkdown", "headings": [ "Load packages", "Survey data", "Count data", "Fit TRIM Model", "Create Index" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 }, { "source": "winter-birds.Rmd", "filename": "winter-birds.html", "title": "Winter Bird Indicator", "engine": "knitr::rmarkdown", "headings": [ "", "Finland", "Northern Finland", "Southern Finland" ], "created": "2024-01-02 12:37:54", "modified": "2024-01-02 12:37:54", "commits": 1 } ], "_score": 5.734959761272446, "_indexed": true, "_nocasepkg": "fbi", "_universes": [ "luomus", "wkmor1" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.11.41.9000", "date": "2026-07-02T15:28:21.000Z", "distro": "resolute", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/2249826a3fcbb17a589f462dca84dda5a2e9e0a99a1788cca74cd485c02c4ec2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" }, { "r": "4.6.1", "os": "linux", "version": "0.11.41.9000", "date": "2026-07-02T15:27:29.000Z", "distro": "resolute", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/3def5a526add09946196a42c9fb9bf79db03a1f572290505556605877a4c4382", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" }, { "r": "4.5.3", "os": "mac", "version": "0.11.41.9000", "date": "2026-07-02T15:33:11.000Z", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/49458e388c5bf61efa92dbe54f928f9840c4ce5da0fc1a70f9b024a408b6d508", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" }, { "r": "4.6.1", "os": "mac", "version": "0.11.41.9000", "date": "2026-07-02T15:32:52.000Z", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/33704c13266560690d83f66d548c56e9a46e8497ca93b935cf949863eb65c595", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" }, { "r": "4.6.0", "os": "wasm", "version": "0.11.41.9000", "date": "2026-07-02T15:27:58.000Z", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/3611de60887d8ec5cffa4082f3dabca9ca99c065c90c85bfa88b6d3717220f0c", "status": "success", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" }, { "r": "4.7.0", "os": "win", "version": "0.11.41.9000", "date": "2026-07-02T15:26:46.000Z", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/4a69f79e5d642dc861da44eadee16cd2e798e4dd88cad9c047f4696c1102a6d8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" }, { "r": "4.5.3", "os": "win", "version": "0.11.41.9000", "date": "2026-07-02T15:26:31.000Z", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/497a2563e7e01e1241a2db9e1169751e96bcc38c2528d4774c7e2e13622e5d02", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" }, { "r": "4.6.1", "os": "win", "version": "0.11.41.9000", "date": "2026-07-02T15:26:43.000Z", "commit": "fe30dfa9a76501579bec70fd6921c54776092e85", "fileid": "https://r2.ropensci.org/9705edbd2be057830379cb142473442756af2a882ee3bb9e435300b8485af5f3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/luomus/actions/runs/28601321264" } ] }