Package: finbif 0.9.8.9000

William K. Morris

finbif: Interface for the 'Finnish Biodiversity Information Facility' API

A programmatic interface to the 'Finnish Biodiversity Information Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates Finnish biodiversity data from multiple sources in a single open access portal for researchers, citizen scientists, industry and government. 'FinBIF' allows users of biodiversity information to find, access, combine and visualise data on Finnish plants, animals and microorganisms. The 'finbif' package makes the publicly available data in 'FinBIF' easily accessible to programmers. Biodiversity information is available on taxonomy and taxon occurrence. Occurrence data can be filtered by taxon, time, location and other variables. The data accessed are conveniently preformatted for subsequent analyses.

Authors:Finnish Museum of Natural History - Luomus [cph], William K. Morris [aut, cre]

finbif_0.9.8.9000.tar.gz
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finbif_0.9.8.9000.tgz(r-4.4-any)finbif_0.9.8.9000.tgz(r-4.3-any)
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finbif_0.9.8.9000.tgz(r-4.4-emscripten)finbif_0.9.8.9000.tgz(r-4.3-emscripten)
finbif.pdf |finbif.html
finbif/json (API)
NEWS

# Install 'finbif' in R:
install.packages('finbif', repos = c('https://luomus.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/luomus/finbif/issues

On CRAN:

apibiodiversitybiodiversity-informaticsbiodiversity-informationfinbiffinbif-accessoccurrencesr-programmingspeciesspecimenstaxontaxonomyweb-services

28 exports 5 stars 8.15 score 15 dependencies 3 dependents 42 scripts 623 downloads

Last updated 12 days agofrom:56b41323ea (on dev). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 01 2024
R-4.5-winOKOct 01 2024
R-4.5-linuxOKOct 01 2024
R-4.4-winOKOct 01 2024
R-4.4-macOKOct 01 2024
R-4.3-winOKOct 01 2024
R-4.3-macOKOct 01 2024

Exports:common_namefb_check_taxafb_clear_cachefb_collectionsfb_informal_groupsfb_last_modfb_metadatafb_occurrencefb_occurrence_loadfb_request_tokenfb_taxafb_update_cachefinbif_check_taxafinbif_clear_cachefinbif_collectionsfinbif_informal_groupsfinbif_last_modfinbif_metadatafinbif_occurrencefinbif_occurrence_loadfinbif_request_tokenfinbif_taxafinbif_update_cachefrom_schemascientific_nametaxon_idto_dwcto_native

Dependencies:askpasscpp11curldigestgenericshttrjsonlitelubridatelutzmimeopensslR6Rcppsystimechange

Introduction to the finbif package

Rendered fromfinbif.Rmdusingknitr::rmarkdownon Oct 01 2024.

Last update: 2024-08-06
Started: 2019-06-12

Occurrence records from FinBIF

Rendered fromv02_occurrence_data.Rmdusingknitr::rmarkdownon Oct 01 2024.

Last update: 2024-08-06
Started: 2020-04-23

Selecting and ordering variables

Rendered fromv03_selecting_variables.Rmdusingknitr::rmarkdownon Oct 01 2024.

Last update: 2023-06-28
Started: 2020-04-23

Metadata

Rendered fromv04_metadata.Rmdusingknitr::rmarkdownon Oct 01 2024.

Last update: 2024-08-06
Started: 2020-04-23

Filtering occurrence records

Rendered fromv05_filtering.Rmdusingknitr::rmarkdownon Oct 01 2024.

Last update: 2024-02-29
Started: 2020-04-23

Readme and manuals

Help Manual

Help pageTopics
finbif: Interface for the 'Finnish Biodiversity Information Facility' APIfinbif-package finbif
Caching FinBIF downloadscaching
Filtering FinBIF recordsfilters
Check FinBIF taxafb_check_taxa finbif_check_taxa
Clear cachefb_clear_cache finbif_clear_cache
FinBIF collectionsfb_collections finbif_collections
FinBIF informal groupsfb_informal_groups finbif_informal_groups
Get last modified date for FinBIF occurrence recordsfb_last_mod finbif_last_mod
FinBIF metadatafb_metadata finbif_metadata
Download FinBIF occurrence recordsfb_occurrence finbif_occurrence
Load FinBIF occurrence records from a filefb_occurrence_load finbif_occurrence_load
Get a FinBIF personal access tokenfb_request_token finbif_request_token
Search the FinBIF taxacommon_name fb_taxa finbif_taxa scientific_name taxon_id
Update cachefb_update_cache finbif_update_cache
Convert variable namesfrom_schema to_dwc to_native
FinBIF record variablesvariables